PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo28G0003900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 282aa    MW: 30346.2 Da    PI: 7.1502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo28G0003900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-09206253455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +    sk    a +L + +++++sLq
  Spipo28G0003900 206 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 253
                      8*************************9....788889999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.14E-8200257No hitNo description
SuperFamilySSF474593.14E-15200272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.526202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-15202271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-6206253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDPGGSSGDR SGNSGEYGHE IAESLRFQEE IQSLMTEHES GAENGSSFTA LLGLPANQAM  60
ELLHESEIGD SPAVSPPGVC SIWRLLVDDP KGLAGFPLGS VPTFPSNTDL VERAARLSVF  120
AAEDSPQTSS SKVVKTEPAV SDSNPDSSPA RKPQLRPLKR KEPEKSKAKG SAKRPKSSLE  180
KSVPKPTEEK LPYVHVRARR GQATDSHSLA ERARREKINA RMKLLQELVP GCSKISGTAL  240
VLDEIINHVQ SLQRQVEFLS MRLAAVNPRI DFSGLDSFLS A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913937.11e-114PREDICTED: transcription factor bHLH48-like isoform X2
SwissprotQ8VZ029e-66BH048_ARATH; Transcription factor bHLH48
TrEMBLM0SQ961e-107M0SQ96_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P19330_0011e-106(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-69bHLH family protein